sentieon as pipeline:将前哨DNA分析作为O2管线运行 源码

作为管道的哨兵 将前哨DNA分析作为O2管线运行 设置 。 跑步 设置所需的变量并作为管道运行: ref_dir=/somewhere/hg38 senteion_dir=/somewhere/sentieon license=$senteion_dir/Harvard_Medical_School_DBMI_eval.lic installed=$senteion_dir/sentieon-genomics-202010.01 out_dir=/somwhere/1234567 fq1=PID1234567_1.fq.gz fq2=PID1234567_2.fq.gz runAsPipeline "sentieon_pipeline.sh -r $ref_dir -1 $out_dir/$fq1 -2 $out_dir/$fq2 -o $out_dir -l $license -i $